Information Portal to Chemical Mapping Data of 113073 RNA Sequences



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Aug. 5, 2014 Data for the 11th RNA puzzle, including DMS/CMCT/SHAPE data as well as detailed mutate-and-map data (including every single mutation to every other nucleotide) are available at the following entries: RNAPZ11_STD_001, RNAPZ11_1M7_001,RNAPZ11_1M7_002, and RNAPZ11_1M7_003. Note again that the sequence and structure have been anonymized as required for the RNA puzzles.
July 13, 2014 We have acquired two-dimensional MOHCA-seq proximity mapping data for the twelfth RNA puzzle. Analyzed proximity data are available as entries RNAPZ12_MCA_0000 and RNAPZ12_MCA_0001, and raw sequencing data are available as entries RNAPZ12_MCA_0002 and RNAPZ12_MCA_0003.
July 9, 2014 We have acquired one-dimensional SHAPE, DMS, and CMCT data for the twelfth RNA puzzle. Data are available as entries RNAPZ12_1M7_0000, RNAPZ12_DMS_0000, and RNAPZ12_CMC_0000.
July 7, 2014 We have acquired two-dimensional mutate-and-map data (SHAPE and DMS) for the twelfth RNA puzzle. Data are available as entries RNAPZ12_1M7_0003, and RNAPZ12_DMS_0003.
Nov. 19, 2013 We have acquired one-dimensional SHAPE, DMS, and CMCT measurements, two-dimensional mutate-and-map data (1M7, NMIA and DMS), as well as new mutation/rescue for the 16S rRNA Four-Way Junction. Data is available as entries 16SFWJ_STD_0001, 16SFWJ_1M7_0001, 16SFWJ_NMIA_0001, 16SFWJ_DMS_0001, and 16SFWJ_RSQ_0001.
July 3, 2013 Welcome to Eterna players who want to look at raw data for the Eterna cloud lab! New entries are available for many of the data sets from early 2013, including Cloud Labs 1, 2, 3, and 4, as well as the pilot player projects from 2012, here and here.
May 23, 2013 We have gathered DMS, CMCT, and 1M7 standard-state data for RNA Puzzles 10. RNA Puzzle 10 features two RNAs in complex with one another. Data were gathered for both RNAs in complex and in isolation. The data for RNA #1 is available at RNAPZ10_STD_0001, and the data for RNA #2 is available at RNAPZ10_STD_0002.
May 23, 2013 We have acquired one-dimensional SHAPE, DMS, and CMCT measurements for the ninth RNA puzzle, under a series of analogue ligand conditions. Data is available as entries RNAPZ9_ALG_0001.
May 15, 2013 We have acquired two-dimensional mutate-and-map data (CMCT and nomod) for the eighth RNA Puzzle. Data are available as entries RNAPZ8_CMCT_0001, and RNAPZ8_nomod_0001. We have also acquired one-dimensional HRF (hydroxyl radical footprinting) measurements for the eighth RNA Puzzle. Data is available as entry RNAPZ8_HRF_0001,
May 14, 2013 Data from the EteRNA cloud lab is here! In one shot, we now have expanded our database by more than 5-fold to 4 million data points. And this pipeline will continue, with additional experimental cycles once a month (or more frequently). Check out the EteRNA entries when you browse. And check out EteRNA to join this project in cloud biochemistry!