NEIL1_DMS_0009

NEIL1 dsRNA library

General
Reactivity heatmap for NEIL1_DMS_0009
Download .rdat

Construct

RMDB ID
NEIL1_DMS_0009
Name
NEIL1 dsRNA library
Sequence (77 nt)
AGCCUGCCCUCUGAUCUCUGCCUGUUCCUCUGUCCCACAGGGGGCAAAGGCUACGGGCAGAGAGCGGGGAGGAGGAC
Structure
..(((.(((((((.(((((((((((.(((.((((((....)))))).)))..))))))))))).))))).)))))..
Offset
0
# of constructs
1
# of data points
77
Last modified
08/02/24
Version
1
Owner
Xin Liu

Comments

RNA was heat to 95 C for 2 min and cool on ice for 1-2 min, then incubated at 37 C for 30 min at pH 7.0 (Sodium Cacodylate) with 10 mM MgCl2 to aid folding.
Additional sequences at 5' and 3' end not shown.

Annotation

  • modifier: DMS
  • temperature: 37C
  • chemical: Sodium Cacodylate:300mM (pH7.0), MgCl2:10mM

Citation

Liu X, Sun T, Shcherbina A, Li Q, Jarmoskaite I, Kappel K, Ramaswami G, Das R, Kundaje A, Li JB Learning cis-regulatory principles of ADAR-based RNA editing from CRISPR-mediated mutagenesis. Nature communications (2021) . doi:10.1038/s41467-021-22489-2 . PMID:33846332

Notes

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