RYOS1_NMD_0000

EteRNA Cloud Lab

Eterna
Reactivity heatmap for RYOS1_NMD_0000
Download .rdat

Construct

RMDB ID
RYOS1_NMD_0000
Name
EteRNA Cloud Lab
Sequence (240 nt)
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Structure
................................................................................................................................................................................................................................................
Offset
-1
# of constructs
3031
# of data points
727200
Last modified
07/28/24
Version
2
Owner
Hannah Wayment-Steele

Comments

Output of MAPseeker v1.3
from data: RYOS_r1_etoh

Annotation

  • processing: overmodificationCorrectionExact, ligationBiasCorrection:0.500, backgroundSubtraction, normalization:boxplot
  • temperature: 24C
  • chemical: HEPES:50mM(pH8.0)
  • MAPseq: tag:RTB000, tag:no mod

Citation

Leppek K, Byeon GW, Kladwang W, Wayment-Steele HK, Kerr CH, Xu AF, Kim DS, Topkar VV, Choe C, Rothschild D, Tiu GC, Wellington-Oguri R, Fujii K, Sharma E, Watkins AM, Nicol JJ, Romano J, Tunguz B, Diaz F, Cai H, Guo P, Wu J, Meng F, Shi S, Participants E, Dormitzer PR, Solórzano A, Barna M, Das R Combinatorial optimization of mRNA structure, stability, and translation for RNA-based therapeutics. Nature communications (2022) . doi:10.1038/s41467-022-28776-w . PMID:35318324

Notes

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